2025

Fourier-Based 3D Multistage Transformer for Aberration Correction in Multicellular Specimens

Thayer Alshaabi, Daniel Milkie, Gaoxiang Liu, Cyna Shirazinejad, Jason Hong, Kemal Achour, Frederik Gorlitz, Ana Milunovic-Jevtic, Cat Simmons, Ibrahim Abuzahriyeh, Erin Hong, Samara Williams, Nathanael Harrison, Evan Huang, Eun Bae, Alison Killilea, David Drubin, Ian Swinburne, Srigokul Upadhyayula, Eric Betzig
Research Square, rs. 3. rs-6273247

2024

How to build the virtual cell with artificial intelligence: Priorities and opportunities

Charlotte Bunne, Yusuf Roohani, Yanay Rosen, Ankit Gupta, Xikun Zhang, Marcel Roed, Theo Alexandrov, Mohammed AlQuraishi, Patricia Brennan, Daniel B Burkhardt, Andrea Califano, Jonah Cool, Abby F Dernburg, Kirsty Ewing, Emily B Fox, Matthias Haury, Amy E Herr, Eric Horvitz, Patrick D Hsu, Viren Jain, Gregory R Johnson, Thomas Kalil, David R Kelley, Shana O Kelley, Anna Kreshuk, Tim Mitchison, Stephani Otte, Jay Shendure, Nicholas J Sofroniew, Fabian Theis, Christina V Theodoris, Srigokul Upadhyayula, Marc Valer, Bo Wang, Eric Xing, Serena Yeung-Levy, Marinka Zitnik, Theofanis Karaletsos, Aviv Regev, Emma Lundberg, Jure Leskovec, Stephen R Quake
Cell 187 (25), 7045-7063

2021

Adaptive wavelet distillation from neural networks through interpretations

Wooseok Ha, Chandan Singh, Francois Lanusse, Srigokul Upadhyayula, Bin Yu
Advances in Neural Information Processing Systems 34, 20669-20682